A statistical model to detect asymptomatic infectious individuals with an application in the Phytophthora alni-induced alder decline.
Identifieur interne : 001995 ( Main/Exploration ); précédent : 001994; suivant : 001996A statistical model to detect asymptomatic infectious individuals with an application in the Phytophthora alni-induced alder decline.
Auteurs : Chabi Fabrice Elegbede [France] ; Jean-Claude Pierrat ; Jaime Aguayo ; Claude Husson ; Fabien Halkett ; Benoît MarçaisSource :
- Phytopathology [ 0031-949X ] ; 2010.
Descripteurs français
- KwdFr :
- MESH :
- microbiologie : Alnus, Maladies des plantes.
- physiologie : Phytophthora.
- Modèles biologiques, Modèles statistiques.
English descriptors
- KwdEn :
- MESH :
- microbiology : Alnus, Plant Diseases.
- physiology : Phytophthora.
- Models, Biological, Models, Statistical.
Abstract
In some diseases-in particular, tree root infection-stages of infection and inoculum production level and timing are not readily observable because of uncertainty or time lags in symptom appearance. Here, we pose a criterion, based on relative hazard of disease symptoms, to discriminate between healthy and asymptomatic infected individuals. We design a statistical procedure to estimate the criterion for a 6-year survey of alder decline along a northeastern French river. Individual tree symptom hazard was modeled with Cox's regression model, taking estimation of local infection pressure as a risk factor. From an inoculum production experiment, we thereafter assessed the inoculum production level of target trees, including symptomatic and asymptomatic trees ranked according to their symptoms hazard. Using receiver operating characteristic methods, we first evaluated the criterion performance and determined the discrimination threshold to sort out asymptomatic individuals into healthy and infected. Then, we highlighted the fact that the infected asymptomatic trees were among the major inoculum producers whereas severely declining and dead trees were found to be poor inoculum sources.
DOI: 10.1094/PHYTO-05-10-0140
PubMed: 20932169
Affiliations:
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Here, we pose a criterion, based on relative hazard of disease symptoms, to discriminate between healthy and asymptomatic infected individuals. We design a statistical procedure to estimate the criterion for a 6-year survey of alder decline along a northeastern French river. Individual tree symptom hazard was modeled with Cox's regression model, taking estimation of local infection pressure as a risk factor. From an inoculum production experiment, we thereafter assessed the inoculum production level of target trees, including symptomatic and asymptomatic trees ranked according to their symptoms hazard. Using receiver operating characteristic methods, we first evaluated the criterion performance and determined the discrimination threshold to sort out asymptomatic individuals into healthy and infected. 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Here, we pose a criterion, based on relative hazard of disease symptoms, to discriminate between healthy and asymptomatic infected individuals. We design a statistical procedure to estimate the criterion for a 6-year survey of alder decline along a northeastern French river. Individual tree symptom hazard was modeled with Cox's regression model, taking estimation of local infection pressure as a risk factor. From an inoculum production experiment, we thereafter assessed the inoculum production level of target trees, including symptomatic and asymptomatic trees ranked according to their symptoms hazard. Using receiver operating characteristic methods, we first evaluated the criterion performance and determined the discrimination threshold to sort out asymptomatic individuals into healthy and infected. 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